PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011077184.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C3H
Protein Properties Length: 417aa    MW: 45950 Da    PI: 8.428
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011077184.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.12.2e-114266226
                    -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                    +++ C+++ rtG C++G++C+F+H+
  XP_011077184.1 42 GEPDCSYYIRTGLCRFGATCRFNHP 66
                    6899********************9 PP

2zf-CCCH38.91.4e-1288112327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C+++++tGtCk+G++CkF+H++
  XP_011077184.1  88 QPECQYYLKTGTCKFGATCKFHHPR 112
                     799********************96 PP

3zf-CCCH25.91.7e-08136158527
                     --SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                     +C ++ r+G Ck+G +CkF+H++
  XP_011077184.1 136 NCAYYIRNGLCKFGRTCKFHHPQ 158
                     7********************97 PP

4zf-CCCH36.86.5e-12279304227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     +++ C+f+++tG Ck+G+ CkF+H++
  XP_011077184.1 279 GQPQCQFYMKTGDCKFGAVCKFHHPR 304
                     7899********************96 PP

5zf-CCCH38.22.5e-12324350127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++lC f++r+G+Ck+G++CkF H++
  XP_011077184.1 324 PGEPLCVFYSRYGICKFGPSCKFDHPM 350
                     589**********************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.9864068IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-54067IPR000571Zinc finger, CCCH-type
PfamPF006427.7E-84266IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-54568IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.3E-44665IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.15985113IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-685112IPR000571Zinc finger, CCCH-type
PfamPF006425.9E-1088112IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-789116IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-791115IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.065131159IPR000571Zinc finger, CCCH-type
SMARTSM003560.027131158IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-6134161IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-5136158IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.464277305IPR000571Zinc finger, CCCH-type
SMARTSM003568.9E-5277304IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-8279304IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-6281307IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-5283305IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.234323351IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-7323350IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-9325350IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5326350IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-4328348IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MSLIAFASSA SSSSSSHQDA LLQMNMRPME QMESGPYPVR EGEPDCSYYI RTGLCRFGAT  60
CRFNHPLNRT LAIATARMKS EYPERIGQPE CQYYLKTGTC KFGATCKFHH PRDELGIAGR  120
VALNVLGYPL RPNEINCAYY IRNGLCKFGR TCKFHHPQPS NNMMVPLRDS ALHPPIQSPT  180
TGQLSFHRAH LLPNPQWQTP SSYAPLFMSQ GVASAPGWNT YSGQVEPVSP SENQQGNIQN  240
DGTSYQVEGL NVGSQFGSNT LPIGYYAFKR DNVFPERPGQ PQCQFYMKTG DCKFGAVCKF  300
HHPRERLIPL PDCVLSPIGL PLRPGEPLCV FYSRYGICKF GPSCKFDHPM RVFAHNAAAS  360
ASTDGNAVRD FIAPSPGTLA ISFSPDGLVG AGSTNNQRLS FSESRQKPSG DNNIVTE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077184.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X1
RefseqXP_011077185.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X1
RefseqXP_011077186.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X1
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A022RI830.0A0A022RI83_ERYGU; Uncharacterized protein
STRINGVIT_04s0023g00370.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52892439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-166zinc finger protein 1